PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.101020.1
Common NameCsa_6G483450, LOC101222266
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 224aa    MW: 24902.9 Da    PI: 6.9402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.101020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08123164854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Cucsa.101020.1 123 AARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 164
                     6799*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-14120174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-11121169No hitNo description
Gene3DG3DSA:4.10.280.101.2E-11123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6123164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDPHHLSNPP PHLDRSAMDD HHILHHHHHV HDLDSIWPSF LPFQLSDHHD QQLPTSSTHF  60
VIGYSTPSSG TGDDEEEPEE ELGAMKEMMY KIAAMQPVDI DPSTIRKPKR RNVRISDDPQ  120
SIAARLRRER ISEKIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LQSSQPPQQP  180
STSGGATTAG GGGGWHFPFN KANGSTSSST SMENTPAITP TGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148648.21e-165PREDICTED: transcription factor HEC3-like
SwissprotO813138e-47IND_ARATH; Transcription factor IND
TrEMBLA0A0A0KHS61e-165A0A0A0KHS6_CUCSA; Uncharacterized protein
STRINGGLYMA05G32410.26e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-46bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]